PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G156900.1
Common NameB456_001G156900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 314aa    MW: 35599.3 Da    PI: 5.2791
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G156900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.59.2e-20120169255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +grW+AeIrdp++   r+r++lg+++ta+eAa  +++a+ +++g
  Gorai.001G156900.1 120 KYRGVRQRP-WGRWAAEIRDPTS---RTRVWLGTYDTAQEAALVYDRAAIRIKG 169
                         8********.**********965...4***********************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.235120177IPR001471AP2/ERF domain
SMARTSM003801.1E-34120183IPR001471AP2/ERF domain
CDDcd000181.00E-32120176No hitNo description
SuperFamilySSF541717.19E-21120176IPR016177DNA-binding domain
PfamPF008471.1E-13120169IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-29120177IPR001471AP2/ERF domain
PRINTSPR003671.7E-10121132IPR001471AP2/ERF domain
PRINTSPR003671.7E-10143159IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MNPGRVKYTE RRTVTNKLLK ASSKWFPMES KPKAPRIVRI SVTDGDATDS SSDESEQERH  60
HTVKRHVSEI RIGDCSTFNS NKPSNKQNRP TNNKTNLVNI RSKKQQPQQQ QQQCLSNGVK  120
YRGVRQRPWG RWAAEIRDPT SRTRVWLGTY DTAQEAALVY DRAAIRIKGP DALTNFIKPP  180
ARPSPPEIEL EMTSGYDSGQ ESHSLCSPTS VLRFQSNEET ELQTESKDDS TTQTGWSPVK  240
ELSQYPSNLL DEFLLTDPVV LYDYLDSDNP TPIFFDELSL PEASSNLEHD YGDISIQLDV  300
DFGSCSWDVD NYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-21116176162ATERF1
3gcc_A1e-21116176162ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012481558.10.0PREDICTED: ethylene-responsive transcription factor CRF5-like
TrEMBLA0A0D2NA440.0A0A0D2NA44_G
STRINGPOPTR_0002s16900.15e-94(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25782571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46310.13e-53cytokinin response factor 5
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]